PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_18129_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 339aa    MW: 38213.5 Da    PI: 5.0431
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_18129_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.9e-20210260255
                                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                           +y+GVr+++ +g+++AeIrdp+ +g   r++lg+f+ta eAaka+++a+ +++g
  cra_locus_18129_iso_1_len_1165_ver_3 210 HYRGVRRRP-WGKFAAEIRDPKRRG--SRVWLGTFDTAIEAAKAYDRAAFRMRG 260
                                           8********.**********96554..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.9E-32209269IPR001471AP2/ERF domain
CDDcd000181.34E-30209268No hitNo description
SMARTSM003801.1E-36210274IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-22210269IPR016177DNA-binding domain
PROSITE profilePS5103224.263210268IPR001471AP2/ERF domain
PfamPF008472.3E-14210260IPR001471AP2/ERF domain
PRINTSPR003672.6E-13211222IPR001471AP2/ERF domain
PRINTSPR003672.6E-13250270IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
XETPFEILAL EQIREHLLGE FSPSELFFSA AMNNNDCQSS STTTTSFSSN GAVSNCSDSS  60
YSSQSSSYRS DHHSSSINIY DSLPSRNHEL NDNTQSSFFD FALNTIDFEQ NQRNSSSRSG  120
LAVIDFSQNC NKKFKLESQD SFSSSSSIDF SSEFETKPEI IDLRDGNLPL QTNLPPLKKT  180
FKWIGFSEST QSNHDLTRSP QPKVVGEEKH YRGVRRRPWG KFAAEIRDPK RRGSRVWLGT  240
FDTAIEAAKA YDRAAFRMRG SKAILNFPLE AGKNASDDQS RAAEKKRRRE EDDEVETVVN  300
SETAPSAPNL TPAVDWNPFW EQNIDGIFNL FDDTRLTVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-30209269161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotO803418e-43EF102_ARATH; Ethylene-responsive transcription factor 5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389